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Changes since v1.2.15

New feature

• Structure_threader can now wrap ALStructure!!! This is a major feature and warranted the release of version 1.3.0.

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Changes since v1.2.10

Bug fixes

• Marks numpy>=1.12.1 dependency. The key issue here being in the version number.

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Changes since v1.2.9

Bug fixes

• Corrects a bug with plotting MavericK "Qmatrix" files that did not have a "population identifier" field.

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Changes since v1.2.8

Bug fixes

• Using the plot function on MavericK results now works as intended.
• Improved and clarified how the plot input files should be indicated.

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Changes since v1.2.7

Bug fixes

• Structure_threader now always makes a sanity check for mainparams and extraparams.

New features:

• New option introduced: --seed, which allows the user to define a random seed value. It is not mandatory, and defaults to "1235813".
• Structure_threader now checks if the RANDOMIZE option is set in the extraparams file. If it is, it gets disabled since random seeds are now handled internally.

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Changes since v1.2.6

Bug fixes

• Corrected a bug when sorting plot order using an "indfile" with more than 10 populations.

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Changes since v1.2.5

Bug fixes

• Improved unit and field tests.
• Removed a leftover debugging line.

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Changes since v1.2.4

Bug fixes

• Allows a random seed to be passed to STRUCTURE. This seed will be used to generate N seeds, where N is the number of runs. Each will be attached to the appropriate CLI.

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Changes since v1.2.3

Bug fixes

• Added an extra sanity check for write permissions to the output directory.

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Changes since v1.2.2

Bug fixes

• The "skeletons" module was not being packaged in Pypi. This is now fixed.